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Resources & Tools

Browse all resources and tools.
1.
3D Mol Viewer
View molecular models in 3D.
2.
ABI to FASTA
Convert AB1 files (Applied Biosystems/ABI trace files) to FASTA format.
3.
Amino Acids Quiz
Test your knowledge of amino acids.
4.
Awesome bioinformatics
A curated list of awesome links, tutorials, and resources on bioinformatics and related topics.
5.
Awesome ChemDraw
A curated list of awesome ChemDraw resources, tutorials, and more.
6.
Awesome cheminformatics
A curated list of awesome cheminformatics resources.
7.
Awesome cheminformatics blogs
A curated list of awesome cheminformatics blogs.
8.
Awesome genomics
A curated list of awesome genomics links, tutorials, and resources.
9.
Awesome IUPAC
A curated list of IUPAC resources.
10.
Awesome molecular and cell biology
A curated list of awesome links, tutorials, and resources on molecular and cell biology.
11.
Awesome SMILES
A curated list of awesome links, tutorials, and resources on SMILES (simplified molecular-input line-entry system).
12.
Biochemistry Crossword
A daily crossword puzzle for biochemistry terms.
13.
Bioinformatics Crossword
A daily crossword puzzle for bioinformatics terms.
14.
Canonical SMILES Generator
Convert a SMILES string to its canonical (kekulized) form.
15.
Cheminformatics Crossword
A daily crossword puzzle for cheminformatics terms.
16.
Clustal Editor
A simple online editor for Clustal multiple sequence alignment files.
17.
EMBL Flat File Editor
A simple online editor for the EMBL flat file format.
18.
FASTA Editor
A simple online editor for biological sequences in the FASTA format.
19.
FASTA Parse Tree Viewer
Visualize the parse tree of FASTA files.
20.
FASTQ Editor
A simple online editor for biological sequences in the FASTQ format.
21.
FASTQ to FASTA
Convert FASTQ files to FASTA format.
22.
Fatty Acids Quiz
Test your knowledge of fatty acids.
23.
GenBank Flat File Editor
A simple online editor for the GenBank flat file format.
24.
GenBank to FASTA
Convert GenBank flat files to FASTA format.
25.
Genome Browser
Explore the human genome.
26.
InChIKey to SMILES
An online tool for converting (resolving) InChIKeys to SMILES strings.
27.
IUPAC Multiplicative Prefix Generator
Generate IUPAC multiplicative prefixes for naming chemical compounds.
28.
IUPAC to SMILES
Convert IUPAC names to SMILES strings.
29.
IUPAC to Structure
Convert IUPAC names to 2D structures.
30.
JSmol
What is JSmol and how to use it?
31.
Mol Editor
A simple online editor for Mol files.
32.
Molecular and Cell Biology Crossword
A daily crossword puzzle for molecular and cell biology terms.
33.
Molecule of the Day
Discover a new molecule every day.
34.
Monosaccharides Quiz
Test your knowledge of monosaccharides and their structures.
35.
NCBI Taxonomy Browser
A simple tool for viewing the NCBI taxonomy tree.
36.
Newick Editor
A simple online editor for phylogenetic trees in the Newick format.
37.
Newick Parse Tree Viewer
View the parse trees of Newick strings.
38.
PDB Editor
A simple online editor for Protein Data Bank (PDB) files.
39.
PDB to FASTA
Extract protein/nucleotide sequences from PDB files.
40.
PDBx/mmCIF Editor
A simple online editor for PDBx/mmCIF files.
41.
Phylogenetic Tree Builder
Reconstruct phylogenetic trees from protein or DNA/RNA sequence alignments.
42.
Phylogenetic Tree Editor
An online visual editor for phylogenetic trees.
43.
Plasmid Map Generator
A tool to generate plasmid maps from GenBank files.
44.
Scalable genomic alignment with Progressive Cactus
How progressive alignment makes it possible to efficiently align hundreds to thousands of large genomes.
45.
Sequence Alignment Viewer
Open FASTA files in the browser.
46.
Sequence Logo Generator
Create sequence logos from FASTA alignments.
47.
SMILES Parse Tree Viewer
Visualize the parse tree of a SMILES string.
48.
SMILES to 3D Structure (SMILES to Conformer)
Convert SMILES (simplified molecular-input line-entry system) to a 3D structure online.
49.
SMILES to InChI
Convert SMILES to InChI string online.
50.
SMILES to IUPAC
Convert SMILES to IUPAC name online.
51.
SMILES to Structure
Convert SMILES (simplified molecular-input line-entry system) to a structure online.
52.
SMILES to Structure API
A web service for converting SMILES (simplified molecular-input line-entry system) to MOL.
53.
Structural Formula Viewer
View structural formulas of chemical compounds.
54.
The ambitious challenge of finishing the human genome
Generating a complete human genome sequence, chromosome by chromosome.
55.
What is FASTA and how is it used?
Learn about the FASTA format and its applications.
56.
Working with ChemDraw JS
ChemDraw JS makes it possible to create, view, and edit chemical structures in the browser.